Problem with ConvertToHDF5

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mfernand@fing.edu.uy
MOHID User
Posts: 30
Joined: Thu Jan 01, 1970 00:00
Location: Montevideo, Uruguay

Problem with ConvertToHDF5

Postby mfernand@fing.edu.uy » Tue Oct 31, 2006 13:34

Hi,

I am trying to glue two hdf files from the Lagrangian Module and have no luck with the executable ConvertToHDF5. The executable runs but the resulting output file contains only the first hdf file from that figures in the list of the ConvertToHDF5Action.dat file.

The error message that appears is the following:

-------------------------------------------------------------------------------------
Running ConvertToHDF5...

HDF5-DIAG: Error detected in HDF5 library version: 1.4.3 thread 0. Back trace f
ollows.
#000: E:\\Projectos\\HDF5\\hdf5\\src\\H5D.c line 350 in H5Dopen(): dataset not foun
d
major(15): Dataset interface
minor(31): Object not found
#001: E:\\Projectos\\HDF5\\hdf5\\src\\H5D.c line 1313 in H5D_open(): not found
major(15): Dataset interface
minor(31): Object not found
#002: E:\\Projectos\\HDF5\\hdf5\\src\\H5D.c line 1369 in H5D_open_oid(): unable to
load type info from dataset header
major(15): Dataset interface
minor(23): Unable to initialize
#003: E:\\Projectos\\HDF5\\hdf5\\src\\H5O.c line 1062 in H5O_read(): unable to find
message in object header
major(12): Object header layer
minor(31): Object not found
#004: E:\\Projectos\\HDF5\\hdf5\\src\\H5O.c line 1167 in H5O_find_in_ohdr(): unable
to load object header
major(12): Object header layer
minor(28): Unable to load meta data into cache
#005: E:\\Projectos\\HDF5\\hdf5\\src\\H5AC.c line 275 in H5AC_find(): unable to loa
d object
major(08): Meta data cache layer
minor(28): Unable to load meta data into cache
#006: E:\\Projectos\\HDF5\\hdf5\\src\\H5O.c line 455 in H5O_load(): corrupt object
header
major(12): Object header layer
minor(41): Unrecognized message
GlueInTime - ModuleHDF5Files - ERR05
-----------------------------------------------------------------------------------

It seems as the executable is trying to interpolate grids instead of glueing files but I really can not figure out which is the problem.

The executable I am using is the one provided in the DVD of the Meeting Course helded on Setember 2006 (Day28, Sesion2, Documentation).

Thank you in advanced for your help.
Regards,
Mariana

luis_at_mohid.com
MOHID Developer
Posts: 553
Joined: Thu Jan 01, 1970 00:00
Location: Instituto Superior Técnico - Technical University of Lisbon
Contact:

Postby luis_at_mohid.com » Fri Nov 03, 2006 09:06

Hi Mariana,

I think this executable provided in the course is somehow outdated (in relation to the hdf5 library versions). You should use the one in the MOHID installation folder.

Tell me if it worked.
Best regards,
Luis

mfernand@fing.edu.uy
MOHID User
Posts: 30
Joined: Thu Jan 01, 1970 00:00
Location: Montevideo, Uruguay

Postby mfernand@fing.edu.uy » Wed Nov 08, 2006 13:40

Dear Luis,
I tried with the ConvertToHDF5 of the MOHID installation folder and had no luck with this version either!
Regards,
Mariana

mfernand@fing.edu.uy
MOHID User
Posts: 30
Joined: Thu Jan 01, 1970 00:00
Location: Montevideo, Uruguay

Postby mfernand@fing.edu.uy » Wed Nov 08, 2006 13:41

Dear Luis,
I tried with the ConvertToHDF5 of the MOHID installation folder and had no luck with this version either!
Regards,
Mariana

mfernand@fing.edu.uy
MOHID User
Posts: 30
Joined: Thu Jan 01, 1970 00:00
Location: Montevideo, Uruguay

Postby mfernand@fing.edu.uy » Tue Nov 14, 2006 14:01

Hi Luis,
I am writing once more since I am triying to make some animations and it would be very useful to glue some Lagrangian.hdf files first.
I tried to glue some WaterProperties.hdf5 files with ConvertToHDF5.exe and it worked so I guess there is some problem with the Lagrangian files.

Below is the error message:

Copyright (C) 1985, 1998, 2002, 2006.
Instituto Superior Tecnico, Technical University of Lisbon
-------------------------- MOHID -------------------------

Constructing ConvertToHDF5
Please Wait...

Running ConvertToHDF5...

HDF5-DIAG: Error detected in HDF5 library version: 1.6.4 thread 0. Back trace f
ollows.
#000: D:\\muqun\\hdf5164-release-fortran\\hdf5\\src\\H5Dio.c line 494 in H5Dread():
can't read data
major(15): Dataset interface
minor(24): Read failed
#001: D:\\muqun\\hdf5164-release-fortran\\hdf5\\src\\H5Dio.c line 743 in H5D_read()
: unable to convert between src and dest data types
major(15): Dataset interface
minor(02): Feature is unsupported
#002: D:\\muqun\\hdf5164-release-fortran\\hdf5\\src\\H5T.c line 4044 in H5T_path_fi
nd(): no appropriate function for conversion path
major(13): Datatype interface
minor(29): Unable to initialize object
GlueInResults - ModuleHDF5Files - ERR08

C:\\usuarios\\PuntadelEste\\PuntadelEste\\AnalisisDescargas\\EmisariosLargos\\Animacio
nes>

Hope this helps to guide you trough this problem.
Thank you in advanced for your help.
Regards,
Mariana

luis_at_mohid.com
MOHID Developer
Posts: 553
Joined: Thu Jan 01, 1970 00:00
Location: Instituto Superior Técnico - Technical University of Lisbon
Contact:

Postby luis_at_mohid.com » Mon Nov 20, 2006 16:57

Hi Mariana,

I am not sure if the GlueHDF5Files program works correctly with the Lagrangian files. I've sent the code to Monica. Did you manage to get it running? You can always plot the results from different files (especially using MOHID GIS).
Cheers,
Luis


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